Gene-by-bead matrices and spatial coordinates from the pipeline are provided in data formats (.rds, .h5ad, and .mtx) that are compatible with many spatial transcriptomic and single-cell analysis packages published in R and python.
Cell type annotation by RCTD
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Please refer to the knowledge base for more information on downloading and running the pipeline at your institution or for utilizing our cloud-based version of the bioinformatics pipeline. Additional questions can be directed to technical support.
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